Petr Kulhánek

Lectures:

• Autumn Term
  • C2110 UNIX and Programming
  • C2115 Practical Introduction to Supercomputing
  • C7790 Computational Chemistry and Molecular Modeling I
  • C7800 Computational Chemistry and Molecular Modeling I - Seminar
• Spring Term
  • C8863 Free Energy Calculations
  • C8862 Free Energy Calculations - Seminar
  • C8855 Computational Chemistry and Molecular Modeling II
  • C8856 Computational Chemistry and Molecular Modeling II - Seminar
  • TSM Modelling Molecular Structures

Supervising Master and Bachelor Students:

• 2018 - Viktor Illík, diploma thesis: Structure and Dynamics of Nucleic Acids, Masaryk University, Brno
• 2016 - Michal Růžička, diploma thesis: Architectonics of Nucleic Acids and their Derivatives, Masaryk University, Brno
• 2016 - Jaroslav Oľha, diploma thesis: Integrated Development Environment for the Analysis of Molecular Dynamics Simulations, Masaryk University, Brno
• 2016 - Matej Števuliak, bakalářská práce: Data Analysis and Visualization in Nemesis Program, Masaryk University, Brno
• 2016 - Viktor Illík, bakalářská práce: Tools for Analaysis of Molecular Dynamics Trajectories, Masaryk University, Brno
• 2016 - Ivo Durník, bakalářská práce: Mechanical Properties of Biomolecules, Masaryk University, Brno
• 2015 - Jiří Kratochvíla, diploma thesis: Tools for Virtual Screening, Masaryk University, Brno
• 2015 - Jakub Hynšt, diploma thesis: Application of Virtual Screening for High-affinity Ligand Search, Masaryk University, Brno
• 2015 - Michal Škultéty, diploma thesis: Theoretical Study of Carbonic Anhydrase IX, Masaryk University, Brno
• 2015 - Jakub Planer, bakalářská práce: Photocontrolled Biomolecules, Technical University Brno, Brno
• 2014 - Ivo Kabelka, diploma thesis: Utilization of Free Energy Calculation Methods in Study of Biomolecular Processes, Masaryk University, Brno
• 2014 - Matej Medvecký, diploma thesis: Development of Virtual Screening for High-affinity Ligand Search, Masaryk University, Brno
• 2014 - Michal Růžička, bakalářská práce: Force Field Parametrization for Molecular Dynamics Simulations of Nucleic Acid Nucleotide Analogues, Masaryk University, Brno
• 2013 - Jakub Hynšt, bakalářská práce: Study of Enzymatic Reaction Mechanisms by Computational Methods, Masaryk University, Brno
• 2012 - Ivo Kabelka, bachelor thesis: Structural Characteristics of Selected Nucleases, Masaryk University, Brno
• 2012 - Jan Slavík, diploma thesis: Computational Study of Structure and Dynamics of Supramolecular Complexes Based on Glycoluril Units, Masaryk University, Brno
• 2012 - Petr Balík, diploma thesis: Multiplatform 3D molecular structure editor, Masaryk University, Brno
• 2011 - Markéta Vacková, bachelor thesis: Library of Saccharide Derivatives Targeted to Virtual Screening, Masaryk University, Brno
• 2009 - Jakub Štěpán, diploma thesis: Multiplatform 3D Molecular Structure Editor, Masaryk University, Brno
• 2008 - Zora Střelcová, diploma thesis: Computational Study of Pseudorotaxane Complexes, Masaryk University, Brno
• 2007 - Jakub Štěpán, bachelor thesis: Analysis of Molecular Dynamics Simulation Trajectories, Masaryk University, Brno